Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs113707524 chr14:43803967 C/A 3.2E-6 286 26.48 18.47 13.17 KM Plot
KIRP rs113711447 chr9:96510568 T/G 0.000157 279 25.62 27.77 13.17 KM Plot
KIRP rs113729672 chr10:88207730 G/A 5.63E-8 286 26.38 22.57 9.77 KM Plot
KIRP rs113736709 chr14:43793532 C/G 3.37E-6 285 26.48 19.43 13.17 KM Plot
KIRP rs113821863 chr21:44232131 T/C 0.000112 285 25.23 43.53 13.07 KM Plot
KIRP rs113828183 chr21:44259057 G/A 0.000171 286 25.53 43.53 13.07 KM Plot
KIRP rs113832768 chr10:124810246 AAG/A 3.24E-6 287 19.63 26.4 25.6 KM Plot
KIRP rs113840812 chr12:49803158 G/A 4.08E-6 286 25.58 39.53 10.97 KM Plot
KIRP rs113847672 chr16:89523481 C/T 0.000139 283 25.67 26.37 15.15 KM Plot
KIRP rs11386906 chr5:156480221 A/AG 5.27E-6 285 12.1 24.02 26.28 KM Plot
KIRP rs113878551 chr10:43166615 C/T 6.46E-5 288 25.57 27.75 11.43 KM Plot
KIRP rs113883123 chr21:44239760 A/G 0.000169 288 25.53 43.53 13.07 KM Plot
KIRP rs113934340 chr21:44269117 C/T 0.000153 286 25.57 40.7 13.07 KM Plot
KIRP rs113974432 chr16:89721135 G/C 3.66E-8 280 26.2 25.6 9.77 KM Plot
KIRP rs113976523 chr10:43144471 G/A 6.87E-5 289 25.57 27.47 11.43 KM Plot